Can bank file a case of cheque bounce for the security cheque

I have a personal loan from a private bank. Due to financial crisis I stopped paying emis after 2 and half years. Bank used one security cheque and withdrawal from my A/c linked for Emi's. I put stop payment on other security cheques. In this case if bank try to withdraw and security cheque get dishonoured, do it falls under criminal offence of cheque bouncing in this scenario? Please advise.