Can a boy file rape case against a girl

No...a girl cannot changed under rape case...no doubt a boy can file case under 323 Ipc or 326 Ipc depend on fact and circumstances of the case.....................
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Traditionally, state rape laws defined rape as a man forcing a woman to have sexual intercourse. This traditional notion of rape is reinforced by various misconceptions and social stigmas. For instance, many people believe that it is impossible for a woman to rape a man because they believe that the male erectile response is voluntary. However, this is untrue as this is an involuntary response. Additionally, many people believe that women are unable to rape a man because they are smaller and weaker. This too is untrue, as a woman is also capable of physically injuring a man and forcing herself on him. Further, a female rapist may compel sexual intercourse through the threat of a weapon, or by the use of a date rape drug. Many people also believe that women cannot rape men because men always want to have sex. This social stigma is untrue and should not be used as a basis for finding consent from the man.
However in India, there is no legal provision for prosecuting a woman for raping a boy or man because section 375 IPC only defines rape of a woman by man. However, I may able to give you proper advice on personal meeting.

certainly, she can file a case against her.
however, the chance of success can be determined only after going through the facts of the case, and circumstances.
However, it is surprising, why so late she want to file a case?

No, its impossible to file a rape case against a girl and any girl consipirator. You can file a complaint under criminal breach of trust and you can also file a case for damages but you can not file a case for rape